Table of Contents

  • Notices and Trademarks
  • Open this section 1. Introduction
    • Open this section 1.1. Installing Chenomx NMR Suite
      • Windows (64-bit)
      • Windows (32-bit)
      • Mac OS X
      • Linux (64-bit)
      • Linux (32-bit)
    • 1.2. Running Chenomx NMR Suite
    • 1.3. Software Updates
    • 1.4. Tutorial and Sample Files
  • Open this section 2. Handling Samples and Spectra
    • Open this section 2.1. Sample Preparation
      • Preparing Filter Tubes for Sample Filtration
      • Filtering the Sample through Microcentrifuge Filter Tube
      • Internal Standard Solution
    • Open this section 2.2. Spectral Data Acquisition
      • Pulse Sequences
      • Required NMR Parameters
    • Open this section 2.3. Spectral Data Processing
      • Data Processed with Other Software
  • Open this section 3. Common Tasks
    • 3.1. Processing a Spectrum
    • 3.2. Profiling a Spectrum
    • 3.3. Identifying Compounds
    • 3.4. Profiling Overlapped Regions in a Spectrum
    • 3.5. Determining Compound Concentrations
  • Open this section 4. The Basics
    • 4.1. Opening Files
    • 4.2. Importing Spectra
    • 4.3. Saving Files
    • 4.4. Closing Files
    • 4.5. Exiting Modules
    • 4.6. Undo and Redo
    • 4.7. Change Columns
    • Open this section 4.8. Sidebar
      • Legend
      • Files
      • Reference Cards
      • Spectrum Details
      • Processing History
      • Compound Sets
      • Simulation
    • 4.9. Spectrum Overlays
    • Open this section 4.10. Spectrum Graph Tools
      • Show Entire Spectrum
      • Set Zoom
      • Undo/Redo Zoom
      • Auto Zoom
      • Increase/Decrease Vertical Zoom
      • Increase/Decrease Horizontal Zoom
      • Spectrum Graph
      • Spectrum Thumbnail
      • Select Region
    • 4.11. Export Spectrum Image
    • 4.12. Copy Spectrum Image to Clipboard
    • 4.13. Display Options
    • 4.14. Preferences
  • Open this section 5. Processor
    • 5.1. Overview
    • Open this section 5.2. Processing Tools
      • Line Broadening
      • Phase Correction
      • Baseline Correction
      • Shim Correction
      • Region Deletion
      • Reverse Spectrum
      • Batch Process
    • Open this section 5.3. Calibration Tools
      • Calibrate CSI
      • Define Custom CSI
      • Calibrate pH
      • Calibration Tool
    • Open this section 5.4. Information Tools
      • Spectrum Details (Sidebar)
      • Processing History (Sidebar)
    • Open this section 5.5. Importing and Exporting Data
      • Batch Import
      • Send to Profiler
      • Export as JCAMP-DX
  • Open this section 6. Profiler
    • 6.1. Overview
    • Open this section 6.2. Profiling Tools
      • Compound Table
      • Custom Colors
      • Pinned Compounds
      • Starred Compounds
      • Remember Selection
      • Quick Searches
      • Concentrations and Compound Fits
      • Fit Automatically
      • Concentration Fitting and Optimization Tool
      • Enforce Transform Windows
      • Scale Concentrations
      • Batch Edit
      • pH Tool
      • Compound Snapper
      • Batch Fit
    • 6.3. Cluster Navigator
    • Open this section 6.4. Compound Set Tools
      • Compound Sets (Sidebar)
    • Open this section 6.5. Importing and Exporting Data
      • Batch Export
      • Export Compound Table
      • Export Profiled Compounds
      • Import Profile
      • Send to Processor
    • 6.6. Spectral Binning
    • Open this section 6.7. Information Tools
      • Legend (Sidebar)
      • Reference Card Panel (Sidebar)
      • Spectrum Details (Sidebar)
      • Concentration Units
  • Open this section 7. Spin Simulator
    • 7.1. Overview
    • Open this section 7.2. Simulating Tools
      • New Simulation
      • Spin Systems
      • Spin Definitions
      • Spin Navigator
      • J-Modifiers
    • Open this section 7.3. Information Tools
      • Spin Definition (Sidebar)
      • Simulation Details
  • Open this section 8. Compound Builder
    • 8.1. Overview
    • Open this section 8.2. Building Tools
      • New Compound
      • Import Simulation
      • Adding Peaks
      • Selecting Peaks and Clusters
      • Delete Selected Peaks
      • Adjusting Peaks
      • Grouping Peaks as a Cluster
      • Optimize Selected Peak Shapes
      • Generate Cluster for Region
      • Transform Windows
      • pH Sensitivities
      • Manage Cluster IDs
      • Cluster Navigator
    • Open this section 8.3. Information Tools
      • Reference Card Panel (Sidebar)
      • Compound Details
      • Information Panel
    • 8.4. Compound Fit Style
  • Open this section 9. Library Manager
    • 9.1. Overview
    • Open this section 9.2. Library Tools
      • Compound Table
      • Quick Searches
      • Add Compounds
      • Export Compounds
      • Send to Compound Builder
      • Remove Compounds
      • Update Compounds
    • Open this section 9.3. Compound Set Tools
      • Compound Sets (Sidebar)
      • Automatic Compound Sets
      • Compound Sets
      • Smart Compound Sets
      • Rename Compound Sets
      • Remove Compound Sets
    • Open this section 9.4. Reference Card Editor
      • Required Details
      • Optional Details
    • Open this section 9.5. Information Tools
      • Reference Card Panel (Sidebar)
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4.14 Preferences

In Preferences, you can specify default folders, default settings for the Spectrum Graph, colors of various graph elements and some module-specific settings.

Menu Location File > Preferences
Icon Preferences icon

How do I change preferences?

  1. Open the Preferences module.

  2. Select the module for which you would like to change preferences.

  3. Make your desired changes.

  4. Click OK.

How do I turn off animated zooming?

  1. Switch to the General module in Preferences.

  2. Clear the check box labeled Enable Zoom Animation.

How do I change colors?

  1. Click the swatch box corresponding to the color you would like to change.

  2. Click a new color on the color palette.

  3. Click OK to accept the selected color.

How do I set the initial zoom?

  1. Select a module tab.

  2. Select the Initial Zoom check box.

  3. In the Initial Zoom fields, enter the default values (in ppm) for the range of the spectrum to display.

How do I specify the default file folder?

  1. Select a module tab.

  2. Click the Always use this folder button.

  3. Click the default folder browse button (...).

  4. Locate the desired folder.

  5. Click Select to select the specified folder.

Tips and Tricks

  • When you click on a color swatch to change a color, the simple color chooser that appears initially lets you choose from a selection of 15 common, well-distinguished colors. Colors in this selection that are already used in the current module's preferences are indicated with a faint white checkmark, while the currently selected color is indicated with a strong white checkmark.

  • Avoid light line colors with a light (or white) background, as they are difficult to see on screen or in a printout.

  • The low and high frequencies for the initial zoom must be at least 1 ppm apart.

  • The Advanced Preferences button allows you to specific additional preferences and special preference overrides. Most users will not use this feature.

Related Topics

  • “Spectrum Graph Tools”

Table 4.3. Preferences Overview

General Preferences
Application Updates Lets you check for software updates, and toggle whether the software will check for updates automatically.
Zooming Preferences Lets you change the color of the zoom box, and toggle the zooming animations used when you change zoom settings in the Spectrum Graph.
Reset Welcome Dialogs Turns on initial welcome dialogs for all modules, in case you want to see them again after choosing Don't show this message again.
Graph Settings
Show Spectrum Line Toggles the default display of the spectrum line in the Spectrum Graph in Processor and Profiler, and lets you set its default color.
Show Sum Line Toggles the default display of the sum line in the Spectrum Graph in Profiler, and lets you set its default color.
Show Compound Line Toggles the default display of the compound line in the Spectrum Graph in Compound Builder, and lets you set its default color.
Show Simulation Line Toggles the default display of the simulation line in the Spectrum Graph in Spin Simulator, and lets you set its default color.
Show Subtraction Line Toggles the default display of the subtraction line in the Spectrum Graph in every module except Library Manager, and lets you set its default color.
Selection Line Changes the default color of the selection line in the Spectrum Graph in Profiler, Compound Builder and Spin Simulator.
Overlay Lines Changes the default color of spectrum overlay lines in the Spectrum Graph in Profiler, Processor, Compound Builder and Spin Simulator.
CSI Line Changes the default color of the CSI line in the Calibrate CSI Spectrum Graph in Processor.
Processing Tools Changes the default color of the processing tools in Processor, including the baseline correction breakpoints, shim correction peak, adjustment triangles, etc.
Initial Zoom (ppm) Sets the frequency range of the Spectrum Graph that initially appears when you open a file.
File Preferences
Display Recent Files Sets the number of files displayed when you click File, then Open Recent.
Default File Folder Sets the default folder for saving and opening files. Options are to use the last used folder, or always use the specified folder.
Library Manager
Custom Reference Cards Location Sets the folder where you can save Custom Reference Cards. The software will load these cards to use with your custom compounds, or override default cards for compounds.


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Last modified: 30 Jun 2021