Table of Contents

  • Open this section 1. Notices and Trademarks
    • 1.1. Technical Support
    • 1.2. Disclaimer of Warranties and Liabilities
    • 1.3. Trademarks
  • Open this section 2. Introduction
    • 2.1. Running Chenomx NMR Suite
    • 2.2. Software Updates
    • 2.3. Tutorial and Sample Files
  • Open this section 3. Handling Samples and Spectra
    • Open this section 3.1. Sample Preparation
      • Preparing Filter Tubes for Sample Filtration
      • Filtering the Sample through Microcentrifuge Filter Tube
      • Internal Standard Solution
    • Open this section 3.2. Spectral Data Acquisition
      • Pulse Sequences
      • Required NMR Parameters
    • Open this section 3.3. Spectral Data Processing
      • Data Processed with Other Software
  • Open this section 4. Processor
    • 4.1. Overview
    • Open this section 4.2. Information Tools
      • Spectrum Details (Sidebar)
      • Processing History (Sidebar)
      • Calibration Tool
    • Open this section 4.3. Processing Steps
      • First Step: Line Broadening
      • Second Step: Phase Correction
      • Third Step: Baseline Correction
      • Fourth Step: Shim Correction
      • Fifth Step: Calibrate CSI
      • Sixth Step: Send to Profiler
    • Open this section 4.4. Optional Steps
      • Region Deletion
      • Reverse Spectrum
      • Define Custom CSI
      • Calibrate pH
      • Export as JCAMP-DX
  • Open this section 5. Profiler
    • 5.1. Overview
    • Open this section 5.2. Profiling Tools
      • Compound Table
      • Cluster Navigator
      • Enforce Transform Windows
      • Scale Concentrations
      • pH Tool
      • Colors/Stars/Pins/Remember Selection
    • Open this section 5.3. Manual Profiling
      • First Step: Identify Compounds
      • Second Step: Determine Compound Concentrations
      • Third Step: Profile Overlapped Regions in a Spectrum
    • Open this section 5.4. Automatic Profiling using a semi-automated approach
      • First Step: Cluster positioning using Compound Snapper
      • Second Step: Concentration optimization using Fit Concentrations
      • COMPLETE Autofit: fully automated profiling approach
    • Open this section 5.5. Importing and Exporting Data
      • Import Profile
      • Export Profiled Compounds
      • Export Compound Table
      • Batch Export
      • Send to Processor
  • Open this section 6. Library Manager
    • 6.1. Overview
    • Open this section 6.2. Library Tools
      • Compound Table
      • Quick Searches
      • Add Compounds
      • Export Compounds
      • Send to Compound Builder
      • Remove Compounds
      • Update Compounds
    • Open this section 6.3. Compound Set Tools
      • Compound Sets (Sidebar)
      • Automatic Compound Sets
      • Compound Sets
      • Smart Compound Sets
      • Rename Compound Sets
      • Remove Compound Sets
    • Open this section 6.4. Reference Card Editor
      • Required Details
      • Optional Details
    • Open this section 6.5. Information Tools
      • Reference Card Panel (Sidebar)
  • Open this section 7. Batching and Binning (PRO Only)
    • Open this section 7.1. Batching
      • Batch Import
      • Batch Process
      • Batch Edit
      • Batch Fit
    • 7.2. Spectral Binning
  • Open this section 8. Compound Builder (PRO Only)
    • 8.1. Overview
    • Open this section 8.2. Information Tools
      • Compound Details
      • Information Panel
      • Cluster Navigator
    • Open this section 8.3. Build a Compound
      • First Step: Sample Preparation and NMR Acquisition
      • Second Step: Process your Spectrum in Processor
      • Third Step: Import new CNX file into Compound Builder.
      • Fourth Step: Add Peaks, Define Clusters and Optimize Shapes
      • Fifth Step: Set Transform Windows
    • Open this section 8.4. Optional Steps
      • Compound Fit Style
      • Import Simulation
      • Generate Cluster for Region
      • New Compound
      • Manage Cluster IDs
      • pH Sensitivities
  • Open this section 9. Spin Simulator
    • 9.1. Overview
    • Open this section 9.2. Simulating Tools
      • New Simulation
      • Spin Systems
      • Spin Definitions
      • Spin Navigator
      • J-Modifiers
    • Open this section 9.3. Information Tools
      • Spin Definition (Sidebar)
      • Simulation Details
  • Open this section 10. The Basics
    • Open this section 10.1. File Management
      • Open Files
      • Importing Spectra
      • Saving Files
      • Closing Files
      • Undo and Redo
    • Open this section 10.2. Preferences
      • Change Columns
      • Display Options
    • Open this section 10.3. Sidebar
      • Legend
      • Files
      • Reference Cards
      • Quick Searches
      • Spectrum Details
      • Processing History
      • Compound Sets
      • Simulation
    • Open this section 10.4. Spectrum Graph
      • Spectrum Thumbnail
      • Select Region
      • Spectrum Overlays
      • Zoom Tools
      • Export Spectrum Image
      • Copy Spectrum Image to Clipboard
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Chapter 9. Spin Simulator

Spin Simulator is a powerful tool for creating simulations of NMR spectra, based on user-defined spin systems and reference spectra. You can use these simulations as starting points for creating your own compound signatures, especially if you need to create signatures at multiple magnet frequencies, or you want to create robust signatures with a strong theoretical backing.

To use Spin Simulator effectively, you'll need a basic understanding of NMR theory, and you should know how to interpret NMR spectra, especially J-coupling. If necessary, Chenomx experts can also provide compound fitting services and help develop specialized compound libraries for you.

For a hands-on introduction to Spin Simulator, see “Tutorial and Sample Files”.

9.1 Overview

Image of the Spin Simulator main window

❶

Sidebar View Dropdown Menu. Lets you change the currently visible Sidebar view.

❷

Spin Definition. Sidebar view that displays the currently selection Spin Definition.

❸

J-Value Editor. Lets you vary the J-value for the currently selected J-modifier.

❹

J-Modifier List. Lets you add, select, edit or remove J-modifiers associated with the currently selected spin definition.

❺

Spin Definition List and Simulation Details. Facilitates selection of spin definitions and spin systems. Also displays information about the current simulation, including the simulation frequency and numbers of spin systems, transitions, and J-modifiers represented in the simulation.

❻

Spin Navigator. Lets you navigate among the spin definitions of the currently open simulation. You can enable or disable the Spin Navigator using the View menu.

❼

Spectrum Graph. Displays the spectrum overlay as well as the simulation line and the currently selected spin definitions.

❽

Spectrum Thumbnail. Displays a thumbnail image of the current spectrum. You can also use the thumbnail to navigate the Spectrum View at various zoom settings.

❾

Status Bar. Displays the current cursor position in the units specified by the View > X Scale and View > Y Scale settings. Also displays information about recent user actions.


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8.4 Optional Steps Home 9.2 Simulating Tools
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Last modified: 27 Jun 2023