Table of Contents

• 1. Notices and Trademarks
  • 1.1. Technical Support
  • 1.2. Disclaimer of Warranties and Liabilities
  • 1.3. Trademarks
• 2. Introduction
  • 2.1. Running Chenomx NMR Suite
  • 2.2. Software Updates
  • 2.3. Tutorial and Sample Files
• 3. Handling Samples and Spectra
  • 3.1. Sample Preparation
    • Preparing Filter Tubes for Sample Filtration
    • Filtering the Sample through Microcentrifuge Filter Tube
    • Internal Standard Solution
  • 3.2. Spectral Data Acquisition
    • Pulse Sequences
    • Required NMR Parameters
  • 3.3. Spectral Data Processing
    • Data Processed with Other Software
• 4. Processor
  • 4.1. Overview
  • 4.2. Information Tools
    • Spectrum Details (Sidebar)
    • Processing History (Sidebar)
    • Calibration Tool
  • 4.3. Processing Steps
    • First Step: Line Broadening
    • Second Step: Phase Correction
    • Third Step: Baseline Correction
    • Fourth Step: Shim Correction
    • Fifth Step: Calibrate CSI
    • Sixth Step: Send to Profiler
  • 4.4. Optional Steps
    • Region Deletion
    • Reverse Spectrum
    • Define Custom CSI
    • Calibrate pH
    • Export as JCAMP-DX
• 5. Profiler
  • 5.1. Overview
  • 5.2. Profiling Tools
    • Compound Table
    • Cluster Navigator
    • Enforce Transform Windows
    • Scale Concentrations
    • pH Tool
    • Colors/Stars/Pins/Remember Selection
  • 5.3. Manual Profiling
    • First Step: Identify Compounds
    • Second Step: Determine Compound Concentrations
    • Third Step: Profile Overlapped Regions in a Spectrum
  • 5.4. Advanced controls
    • Minimal transform windows
    • Manual locking of concentrations
    • Manual locking of peak clusters positions
    • Custom calibration of peak cluster centers ranges for automated procedures
  • 5.5. Automatic Profiling using a semi-automated approach
    • First Step: Cluster positioning using Compound Snapper
    • Second Step: Concentration optimization using Fit Concentrations
  • 5.6. COMPLETE Autofit: fully automated profiling approach
    • How to use COMPLETE AUTOFIT
    • Tips and Limitations of COMPLETE Autofit
    • Note about Legacy Autofit
  • 5.7. Importing and Exporting Data
    • Import Profile
    • Export Profiled Compounds
    • Export Compound Table
    • Batch Export
    • Send to Processor
• 6. Library Manager
  • 6.1. Overview
  • 6.2. Library Tools
    • Compound Table
    • Quick Searches
    • Add Compounds
    • Export Compounds
    • Send to Compound Builder
    • Remove Compounds
    • Update Compounds
  • 6.3. Compound Set Tools
    • Compound Sets (Sidebar)
    • Automatic Compound Sets
    • Compound Sets
    • Smart Compound Sets
    • Rename Compound Sets
    • Remove Compound Sets
  • 6.4. Reference Card Editor
    • Required Details
    • Optional Details
  • 6.5. Information Tools
    • Reference Card Panel (Sidebar)
• 7. Batching and Binning (PRO Only)
  • 7.1. Batching
    • Batch Import
    • Batch Process
    • Batch Edit
    • Batch Fit
    • Batch Operations on Selected Compounds or Clusters
    • Batch Spectral Alignment
  • 7.2. Spectral Binning
• 8. Compound Builder (PRO Only)
  • 8.1. Overview
  • 8.2. Information Tools
    • Compound Details
    • Information Panel
    • Cluster Navigator
  • 8.3. Build a Compound
    • First Step: Sample Preparation and NMR Acquisition
    • Second Step: Process your Spectrum in Processor
    • Third Step: Import new CNX file into Compound Builder.
    • Fourth Step: Add Peaks, Define Clusters and Optimize Shapes
    • Fifth Step: Set Transform Windows
  • 8.4. Optional Steps
    • Compound Fit Style
    • Import Simulation
    • Generate Cluster for Region
    • New Compound
    • Manage Cluster IDs
    • pH Sensitivities
• 9. Spin Simulator
  • 9.1. Overview
  • 9.2. Simulating Tools
    • New Simulation
    • Spin Systems
    • Spin Definitions
    • Spin Navigator
    • J-Modifiers
  • 9.3. Information Tools
    • Spin Definition (Sidebar)
    • Simulation Details
• 10. The Basics
  • 10.1. File Management
    • Open Files
    • Importing Spectra
    • Saving Files
    • Closing Files
    • Undo and Redo
  • 10.2. Preferences
    • Change Columns
    • Display Options
  • 10.3. Sidebar
    • Legend
    • Files
    • Reference Cards
    • Quick Searches
    • Spectrum Details
    • Processing History
    • Compound Sets
    • Simulation
  • 10.4. Spectrum Graph
    • Spectrum Thumbnail
    • Select Region
    • Spectrum Overlays
    • Zoom Tools
    • Saving and recalling view settings
    • Export Spectrum Image
    • Copy Spectrum Image to Clipboard