Table of Contents
1. Notices and Trademarks
1.1. Technical Support
1.2. Disclaimer of Warranties and Liabilities
1.3. Trademarks
2. Introduction
2.1. Running Chenomx NMR Suite
2.2. Software Updates
2.3. Tutorial and Sample Files
3. Handling Samples and Spectra
3.1. Sample Preparation
Preparing Filter Tubes for Sample Filtration
Filtering the Sample through Microcentrifuge Filter Tube
Internal Standard Solution
3.2. Spectral Data Acquisition
Pulse Sequences
Required NMR Parameters
3.3. Spectral Data Processing
Data Processed with Other Software
4. Processor
4.1. Overview
4.2. Information Tools
Spectrum Details (Sidebar)
Processing History (Sidebar)
Calibration Tool
4.3. Processing Steps
First Step: Line Broadening
Second Step: Phase Correction
Third Step: Baseline Correction
Fourth Step: Shim Correction
Fifth Step: Calibrate CSI
Sixth Step: Send to Profiler
4.4. Optional Steps
Region Deletion
Reverse Spectrum
Define Custom CSI
Calibrate pH
Export as JCAMP-DX
5. Profiler
5.1. Overview
5.2. Profiling Tools
Compound Table
Cluster Navigator
Enforce Transform Windows
Scale Concentrations
pH Tool
Colors/Stars/Pins/Remember Selection
5.3. Manual Profiling
First Step: Identify Compounds
Second Step: Determine Compound Concentrations
Third Step: Profile Overlapped Regions in a Spectrum
5.4. Advanced controls
Minimal transform windows
Manual locking of concentrations
Manual locking of peak clusters positions
Custom calibration of peak cluster centers ranges for automated procedures
5.5. Automatic Profiling using a semi-automated approach
First Step: Cluster positioning using Compound Snapper
Second Step: Concentration optimization using Fit Concentrations
5.6. COMPLETE Autofit: fully automated profiling approach
Accelerating COMPLETE Autofit
How to use COMPLETE AUTOFIT
Tips and Limitations of COMPLETE Autofit
Note about Legacy Autofit
5.7. Importing and Exporting Data
Import Profile
Export Profiled Compounds
Export Compound Table
Batch Export
Send to Processor
6. Library Manager
6.1. Overview
6.2. Library Tools
Compound Table
Quick Searches
Add Compounds
Export Compounds
Send to Compound Builder
Remove Compounds
Update Compounds
6.3. Compound Set Tools
Compound Sets (Sidebar)
Automatic Compound Sets
Compound Sets
Smart Compound Sets
Rename Compound Sets
Remove Compound Sets
6.4. Reference Card Editor
Required Details
Optional Details
6.5. Information Tools
Reference Card Panel (Sidebar)
7. Batching and Binning (PRO Only)
7.1. Batching
Batch Import
Batch Process
Batch Edit
Batch Fit
Batch Operations on Selected Compounds or Clusters
Batch Spectral Alignment
7.2. Spectral Binning
8. Compound Builder (PRO Only)
8.1. Overview
8.2. Information Tools
Compound Details
Information Panel
Cluster Navigator
8.3. Build a Compound
First Step: Sample Preparation and NMR Acquisition
Second Step: Process your Spectrum in Processor
Third Step: Import new CNX file into Compound Builder.
Fourth Step: Add Peaks, Define Clusters and Optimize Shapes
Fifth Step: Set Transform Windows
8.4. Optional Steps
Compound Fit Style
Import Simulation
Generate Cluster for Region
New Compound
Manage Cluster IDs
pH Sensitivities
9. Spin Simulator
9.1. Overview
9.2. Simulating Tools
New Simulation
Spin Systems
Spin Definitions
Spin Navigator
J-Modifiers
9.3. Information Tools
Spin Definition (Sidebar)
Simulation Details
10. The Basics
10.1. File Management
Open Files
Importing Spectra
Saving Files
Closing Files
Undo and Redo
10.2. Preferences
Change Columns
Display Options
10.3. Sidebar
Legend
Files
Reference Cards
Quick Searches
Spectrum Details
Processing History
Compound Sets
Simulation
10.4. Spectrum Graph
Spectrum Thumbnail
Select Region
Spectrum Overlays
Zoom Tools
Saving and recalling view settings
Export Spectrum Image
Copy Spectrum Image to Clipboard
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